BioC 3.4: Build/check report for morelia

a4Base 1.21.0

Tobias Verbeke , Willem Ligtenberg

a4Classif 1.21.0

Tobias Verbeke , Willem Ligtenberg

a4Core 1.21.0

Tobias Verbeke , Willem Ligtenberg

a4Preproc 1.21.0

Tobias Verbeke , Willem Ligtenberg

a4Reporting 1.21.0

Tobias Verbeke , Willem Ligtenberg

ABAEnrichment 1.3.3

Steffi Grote

ABarray 1.41.0

Yongming Andrew Sun

ABSSeq 1.9.0

Wentao Yang

acde 1.3.1

Juan Pablo Acosta

aCGH 1.51.0

Peter Dimitrov

ACME 2.29.0

Sean Davis

ADaCGH2 2.13.0

Ramon Diaz-Uriarte

adSplit 1.43.0

Claudio Lottaz

affxparser 1.45.1

Kasper Daniel Hansen

affy 1.51.1

Rafael A. Irizarry

affycomp 1.49.0

Rafael A. Irizarry

AffyCompatible 1.33.0

Martin Morgan

affyContam 1.31.0

V. Carey

skipped

affycoretools 1.45.3

James W. MacDonald

AffyExpress 1.39.0

Xuejun Arthur Li

affyILM 1.25.0

Myriam Kroll and Fabrice Berger

affyio 1.43.0

Benjamin Milo Bolstad

affylmGUI 1.47.0

Yifang Hu , Gordon Smyth , Keith Satterley

affyPara 1.33.0

Markus Schmidberger

affypdnn 1.47.0

Laurent Gautier

affyPLM 1.49.1

Ben Bolstad

affyQCReport 1.51.0

Craig Parman

AffyRNADegradation 1.19.0

Mario Fasold

AGDEX 1.21.0

Cuilan lani Gao

agilp 3.5.0

Benny Chain

AgiMicroRna 2.23.0

Pedro Lopez-Romero

AIMS 1.5.0

Eric R Paquet

ALDEx2 1.5.1

Greg Gloor

AllelicImbalance 1.11.3

Jesper R Gadin

alpine 0.99.8

Michael Love

alsace 1.9.0

Ron Wehrens

altcdfenvs 2.35.0

Laurent Gautier

AMOUNTAIN 0.99.2

Dong Li

ampliQueso 1.11.0

Michal Okoniewski

AnalysisPageServer 1.7.3

Brad Friedman

Anaquin 0.99.13

Ted Wong

AneuFinder 1.1.6

Aaron Taudt

annaffy 1.45.0

Colin A. Smith

annmap 1.15.0

Chris Wirth

skipped

annotate 1.51.1

Bioconductor Package Maintainer

AnnotationDbi 1.35.4

Bioconductor Package Maintainer

skipped

AnnotationForge 1.15.10

Bioconductor Package Maintainer

AnnotationFuncs 1.23.0

Stefan McKinnon Edwards

AnnotationHub 2.5.12

Bioconductor Package Maintainer

AnnotationHubData 1.3.14

Bioconductor Package Maintainer

annotationTools 1.47.0

Alexandre Kuhn

anota 1.21.0

Ola Larsson

antiProfiles 1.13.0

Hector Corrada Bravo

apComplex 2.39.0

Denise Scholtens

aroma.light 3.3.2

Henrik Bengtsson

ArrayExpress 1.33.0

Ugis Sarkans

ArrayExpressHTS 1.23.1

Angela Goncalves , Andrew Tikhonov

arrayMvout 1.31.0

V. Carey

skipped

arrayQuality 1.51.0

Agnes Paquet

arrayQualityMetrics 3.29.2

Audrey Kauffmann

ArrayTools 1.33.1

Arthur Li

skipped

ArrayTV 1.11.0

Eitan Halper-Stromberg

ARRmNormalization 1.13.0

Jean-Philippe Fortin

ASAFE 0.99.0

Qian Zhang

ASEB 1.17.0

Likun Wang

ASGSCA 1.7.0

Hela Romdhani

ASpli 0.99.13

Estefania Mancini

ASSET 1.11.0

William Wheeler

ASSIGN 1.9.0

Ying Shen

AtlasRDF 1.9.0

James Malone

skipped

attract 1.25.1

Samuel Zimmerman

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BAC 1.33.0

Raphael Gottardo

bacon 1.1.6

Maarten van Iterson

BADER 1.11.0

Andreas Neudecker

BadRegionFinder 1.1.0

Sarah Sandmann

BAGS 2.13.0

Alejandro Quiroz-Zarate

ballgown 2.5.2

Jack Fu

bamsignals 1.5.3

Alessandro Mammana

BaseSpaceR 1.17.0

Jared O'Connell

Basic4Cseq 1.9.0

Carolin Walter

BasicSTARRseq 1.1.2

Annika Buerger

BatchQC 1.1.22

Solaiappan Manimaran

BayesKnockdown 0.99.4

William Chad Young

BayesPeak 1.25.0

Jonathan Cairns

baySeq 2.7.5

Thomas J. Hardcastle

BBCAnalyzer 1.3.0

Sarah Sandmann

BCRANK 1.35.0

Adam Ameur

beadarray 2.23.2

Mark Dunning

skipped

beadarraySNP 1.39.0

Jan Oosting

BeadDataPackR 1.25.2

Mike Smith

BEAT 1.11.0

Kemal Akman

BEclear 1.5.0

Markus Merl

betr 1.29.0

Martin Aryee

skipped

bgafun 1.35.0

Iain Wallace

BgeeDB 1.0.3

Andrea Komljenovic , Frederic Bastian

BGmix 1.33.0

Alex Lewin

bgx 1.39.1

Ernest Turro

BHC 1.25.0

Rich Savage

BicARE 1.31.0

Pierre Gestraud

BiGGR 1.9.0

Anand K. Gavai , Hannes Hettling

bigmemoryExtras 1.19.2

Peter M. Haverty

bioassayR 1.11.15

Tyler Backman

Biobase 2.33.3

Bioconductor Package Maintainer

biobroom 1.5.2

John D. Storey and Andrew J. Bass

bioCancer 1.0.0

Karim Mezhoud

BiocCaseStudies 1.35.0

Bioconductor Package Maintainer

BiocCheck 1.9.6

Bioconductor Package Maintainer

BiocGenerics 0.19.2

Bioconductor Package Maintainer

biocGraph 1.35.0

Florian Hahne

BiocInstaller 1.23.9

Bioconductor Package Maintainer

BiocParallel 1.7.8

Bioconductor Package Maintainer

BiocStyle 2.1.30

Bioconductor Package Maintainer

biocViews 1.41.8

Bioconductor Package Maintainer

BiocWorkflowTools 0.99.8

Mike Smith

bioDist 1.45.0

Bioconductor Package Maintainer

biomaRt 2.29.2

Steffen Durinck

biomformat 1.1.2

Paul J. McMurdie

BioMVCClass 1.41.0

Elizabeth Whalen

biomvRCNS 1.13.0

Yang Du

BioNet 1.33.0

Marcus Dittrich

BioQC 1.1.0

Jitao David Zhang

BioSeqClass 1.31.0

Li Hong

skipped

biosigner 1.1.10

Philippe Rinaudo , Etienne Thevenot

Biostrings 2.41.4

H. Pagès

biosvd 2.9.0

Anneleen Daemen , Matthew Brauer

biovizBase 1.21.0

Michael Lawrence

BiRewire 3.3.1

Andrea Gobbi

birta 1.17.0

Benedikt Zacher , Holger Froehlich

birte 1.9.2

Holger Froehlich

skipped

BiSeq 1.13.0

Katja Hebestreit

BitSeq 1.17.0

Antti Honkela , Panagiotis Papastamoulis

blima 1.7.0

Vojtech Kulvait

BRAIN 1.19.0

Piotr Dittwald

BrainStars 1.17.0

Itoshi NIKAIDO

skipped

bridge 1.37.0

Raphael Gottardo

BridgeDbR 1.7.0

Anwesha Bohler

BrowserViz 1.4.1

Paul Shannon

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

BrowserVizDemo 1.5.1

Paul Shannon

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

BSgenome 1.41.2

H. Pagès

bsseq 1.9.2

Kasper Daniel Hansen

BubbleTree 2.3.4

Todd Creasy , Wei Zhu

BufferedMatrix 1.37.0

Benjamin Milo Bolstad

BufferedMatrixMethods 1.37.0

B. M. Bolstad

bumphunter 1.13.1

Rafael A. Irizarry

BUS 1.29.0

Yuanhua Liu

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CAFE 1.9.0

Sander Bollen

CAGEr 1.15.0

Vanja Haberle

CALIB 1.39.0

Hui Zhao

CAMERA 1.29.0

Steffen Neumann

canceR 1.5.2

Karim Mezhoud

cancerclass 1.17.0

Daniel Kosztyla

CancerMutationAnalysis 1.15.0

Simina M. Boca

CancerSubtypes 0.99.10

Taosheng Xu

CAnD 1.5.1

Caitlin McHugh

caOmicsV 1.3.0

Henry Zhang

Cardinal 1.5.0

Kyle D. Bemis

casper 2.7.0

David Rossell

Category 2.39.0

Bioconductor Package Maintainer

categoryCompare 1.17.2

Robert M. Flight

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

CausalR 1.5.2

Glyn Bradley , Steven Barrett , Bhushan Bonde

skipped

ccmap 0.99.9

Alex Pickering

ccrepe 1.9.2

Emma Schwager ,Craig Bielski, George Weingart

cellGrowth 1.17.0

Julien Gagneur

cellHTS2 2.37.0

Joseph Barry

cellity 1.1.3

Tomislav Ilicic

CellMapper 0.99.5

Brad Nelms

CellNOptR 1.19.0

T.Cokelaer

cellTree 1.3.2

David duVerle

CexoR 1.11.0

Pedro Madrigal

CFAssay 1.7.0

Herbert Braselmann

CGEN 3.9.0

William Wheeler

CGHbase 1.33.0

Mark van de Wiel

CGHcall 2.35.0

Mark van de Wiel

cghMCR 1.31.0

J. Zhang

CGHnormaliter 1.27.0

Bart P.P. van Houte

CGHregions 1.31.0

Sjoerd Vosse

ChAMP 1.11.1

Yuan Tian, Tiffany Morris

charm 2.19.0

Peter Murakami

ChemmineOB 1.11.4

Thomas Girke

ChemmineR 2.25.5

Thomas Girke

Chicago 1.1.6

Mikhail Spivakov

chimera 1.15.0

Raffaele A Calogero

ChIPComp 1.3.0

Li Chen

chipenrich 1.11.4

Raymond G. Cavalcante

ChIPpeakAnno 3.7.7

Lihua Julie Zhu , Jianhong Ou

skipped

ChIPQC 1.9.2

Tom Carroll , Rory Stark

ChIPseeker 1.9.8

Guangchuang Yu

chipseq 1.23.0

Bioconductor Package Maintainer

ChIPseqR 1.27.0

Peter Humburg

ChIPsim 1.27.0

Peter Humburg

ChIPXpress 1.15.0

George Wu

chopsticks 1.37.0

Hin-Tak Leung

chroGPS 1.17.0

Oscar Reina

skipped

chromDraw 2.3.0

Jan Janecka

ChromHeatMap 1.27.0

Tim F. Rayner

chromPlot 1.1.0

Karen Y. Orostica

chromstaR 0.99.7

Aaron Taudt

CHRONOS 1.1.3

Panos Balomenos

CINdex 1.1.2

Yuriy Gusev

cisPath 1.13.0

Likun Wang

ClassifyR 1.7.4

Dario Strbenac

cleanUpdTSeq 1.11.2

Sarah Sheppard ; Jianhong Ou ; Lihua Julie Zhu

cleaver 1.11.2

Sebastian Gibb

clippda 1.23.1

Stephen Nyangoma

clipper 1.13.0

Paolo Martini

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

Clomial 1.9.4

Habil Zare

Clonality 1.21.0

Irina Ostrovnaya

clonotypeR 1.11.2

Charles Plessy

clst 1.21.0

Noah Hoffman

skipped

clstutils 1.21.0

Noah Hoffman

skipped

clustComp 1.1.1

Aurora Torrente

clusterExperiment 0.99.3

Elizabeth Purdom

clusterProfiler 3.1.8

Guangchuang Yu

ClusterSignificance 1.1.4

Jason T Serviss

clusterStab 1.45.0

James W. MacDonald

CMA 1.31.0

Christoph Bernau

cn.farms 1.21.0

Andreas Mitterecker

cn.mops 1.19.0

Guenter Klambauer

CNAnorm 1.19.0

Stefano Berri

CNEr 1.9.39

Ge Tan

CNORdt 1.15.0

A. MacNamara

CNORfeeder 1.13.0

F.Eduati

CNORfuzzy 1.15.0

T. Cokelaer

CNORode 1.15.0

David Henriques

CNPBayes 1.3.2

Jacob Carey

CNTools 1.29.0

J. Zhang

cnvGSA 1.17.0

Joseph Lugo

CNVPanelizer 1.3.2

Thomas Wolf

CNVrd2 1.11.2

Hoang Tan Nguyen

CNVtools 1.67.0

Chris Barnes

cobindR 1.11.0

Manuela Benary

CoCiteStats 1.45.0

Bioconductor Package Maintainer

codelink 1.41.2

Diego Diez

CODEX 1.5.1

Yuchao Jiang

CoGAPS 2.7.0

Elana J. Fertig

cogena 1.7.2

Zhilong Jia

coGPS 1.17.0

Yingying Wei

COHCAP 1.14.5

Charles Warden

coMET 1.5.7

Tiphaine Martin

COMPASS 1.11.7

Greg Finak

compcodeR 1.9.2

Charlotte Soneson

compEpiTools 1.7.2

Kamal Kishore

CompGO 1.9.0

Ashley J. Waardenberg

ComplexHeatmap 1.11.6

Zuguang Gu

CONFESS 1.1.2

Diana LOW

ConsensusClusterPlus 1.37.0

Matt Wilkerson

consensusSeekeR 1.1.3

Astrid Louise Deschenes

contiBAIT 1.1.3

Kieran O'Neill

conumee 1.5.2

Volker Hovestadt

skipped

convert 1.49.0

Yee Hwa (Jean) Yang

copa 1.41.0

James W. MacDonald

copynumber 1.13.0

Gro Nilsen

CopyNumber450k 1.9.0

Simon Papillon-Cavanagh

skipped

CopywriteR 2.5.0

Thomas Kuilman

CoRegNet 1.9.2

Remy Nicolle

Cormotif 1.19.0

Yingying Wei

CorMut 1.15.0

Zhenpeng Li

coRNAi 1.23.0

Elin Axelsson

CORREP 1.39.0

Dongxiao Zhu

cosmiq 1.7.0

David Fischer , Christian Panse

COSNet 1.7.0

Marco Frasca

CountClust 1.1.2

Kushal Dey

covEB 0.99.7

C. Pacini

skipped

CoverageView 1.9.0

Ernesto Lowy

covRNA 0.99.2

Lara Urban

cpvSNP 1.5.0

Caitlin McHugh

cqn 1.19.0

Kasper Daniel Hansen

CRImage 1.21.1

Henrik Failmezger , Yinyin Yuan

CRISPRseek 1.13.12

Lihua Julie Zhu

CrispRVariants 1.1.4

Helen Lindsay

crlmm 1.31.2

Benilton S Carvalho , Robert Scharpf , Matt Ritchie

crossmeta 0.99.12

Alex Pickering

CSAR 1.25.0

Jose M Muino

csaw 1.7.3

Aaron Lun

CSSP 1.11.0

Chandler Zuo

ctc 1.47.0

Antoine Lucas

ctsGE 0.99.13

Michal Sharabi-Schwager

cummeRbund 2.15.0

Loyal A. Goff

customProDB 1.13.1

xiaojing wang

skipped

CVE 0.99.80

Andreas Mock

cycle 1.27.0

Matthias Futschik

cytofkit 1.5.7

Jinmiao Chen , Hao Chen

CytoML 0.99.10

Mike Jiang

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dada2 1.1.5

Benjamin Callahan

dagLogo 1.11.2

Jianhong Ou

daMA 1.45.0

Jobst Landgrebe

DAPAR 1.5.9

Samuel Wieczorek

DART 1.21.0

Charles Shijie Zheng

DBChIP 1.17.0

Kun Liang

dcGSA 1.1.2

Jiehuan sun

DChIPRep 1.3.3

Bernd Klaus

ddCt 1.29.0

Jitao David Zhang

ddgraph 1.17.0

Robert Stojnic

debrowser 1.1.9

Alper Kucukural

DECIPHER 2.1.6

Erik Wright

DeconRNASeq 1.15.0

Ting Gong

DEDS 1.47.0

Yuanyuan Xiao

DeepBlueR 0.99.2

Felipe Albrecht , Markus List

deepSNV 1.19.4

Moritz Gerstung

DEFormats 1.1.2

Andrzej Oleś

DEGraph 1.25.1

Laurent Jacob

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

DEGreport 1.9.8

Lorena Pantano

DEGseq 1.27.0

Likun Wang

deltaGseg 1.13.2

Diana Low

DeMAND 1.3.1

Jung Hoon Woo , Mariano Alvarez

derfinder 1.7.12

Leonardo Collado-Torres

derfinderHelper 1.7.4

Leonardo Collado-Torres

derfinderPlot 1.7.8

Leonardo Collado-Torres

DESeq 1.25.0

Simon Anders

DESeq2 1.13.14

Michael Love

destiny 1.99.11

Philipp Angerer

DEXSeq 1.19.7

Alejandro Reyes

dexus 1.13.1

Guenter Klambauer

DFP 1.31.0

Rodrigo Alvarez-Glez

DiffBind 2.1.5

Rory Stark

diffGeneAnalysis 1.55.0

Choudary Jagarlamudi

diffHic 1.5.5

Aaron Lun

DiffLogo 1.3.2

Hendrik Treutler

diffloop 1.1.99

Caleb Lareau

diggit 1.5.2

Mariano J Alvarez

Director 0.99.6

Katherine Icay

DirichletMultinomial 1.15.0

Martin Morgan

dks 1.19.0

Jeffrey T. Leek

DMRcaller 1.5.3

Nicolae Radu Zabet

DMRcate 1.9.2

Tim Peters

DMRforPairs 1.9.0

Martin Rijlaarsdam

DNABarcodes 1.3.2

Tilo Buschmann

DNAcopy 1.47.1

Venkatraman E. Seshan

DNAshapeR 1.1.2

Tsu-Pei Chiu

domainsignatures 1.33.0

Florian Hahne

skipped

doppelgangR 1.1.2

Levi Waldron

DOQTL 1.9.5

Daniel Gatti

DOSE 2.11.11

Guangchuang Yu

DRIMSeq 1.1.2

Malgorzata Nowicka

DriverNet 1.13.0

Jiarui Ding

DrugVsDisease 2.13.0

j. Saez-Rodriguez

dSimer 0.99.3

Peng Ni

DSS 2.13.0

Hao Wu

DTA 2.19.0

Bjoern Schwalb

dualKS 1.33.0

Eric J. Kort , Yarong Yang

DupChecker 1.11.2

"Quanhu SHENG"

dupRadar 1.3.2

Sergi Sayols , Holger Klein

dyebias 1.33.0

Philip Lijnzaad

DynDoc 1.51.0

Bioconductor Package Maintainer

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EasyqpcR 1.15.0

Le Pape Sylvain

easyRNASeq 2.9.2

Nicolas Delhomme

EBarrays 2.37.0

Ming Yuan

EBcoexpress 1.17.0

John A. Dawson

EBImage 4.15.4

Andrzej Oleś

EBSEA 1.1.0

Arfa Mehmood

EBSeq 1.13.0

Ning Leng

EBSeqHMM 1.7.0

Ning Leng

ecolitk 1.45.0

Laurent Gautier

EDASeq 2.7.2

Davide Risso

EDDA 1.11.0

Chia Kuan Hui Burton , Niranjan Nagarajan

edge 2.5.3

John D. Storey , Andrew J. Bass

edgeR 3.15.2

Yunshun Chen , Aaron Lun , Mark Robinson , Davis McCarthy , Gordon Smyth

eegc 0.99.8

Xiaoyuan Zhou

EGAD 1.1.4

Sara Ballouz

EGSEA 1.1.10

Monther Alhamdoosh

eiR 1.13.2

Thomas Girke

eisa 1.25.0

Gabor Csardi

ELBOW 1.9.0

Graham Alvare , Xiangli Zhang

EMDomics 2.3.2

Sadhika Malladi and Daniel Schmolze

EmpiricalBrownsMethod 1.1.2

David Gibbs

ENmix 1.9.5

Zongli Xu

EnrichedHeatmap 1.3.4

Zuguang Gu

EnrichmentBrowser 2.3.3

Ludwig Geistlinger

ensembldb 1.5.13

Johannes Rainer

skipped

ensemblVEP 1.13.1

Bioconductor Package Maintainer

ENVISIONQuery 1.21.0

Alex Lisovich , Roger Day

epigenomix 1.13.0

Hans-Ulrich Klein

epivizr 2.3.9

Hector Corrada Bravo

epivizrData 1.1.4

Hector Corrada Bravo

epivizrServer 1.1.4

Hector Corrada Bravo

epivizrStandalone 1.1.8

Hector Corrada Bravo

erccdashboard 1.7.1

Sarah Munro

erma 0.5.2

VJ Carey

esetVis 0.99.9

Laure Cougnaud

eudysbiome 1.3.3

Xiaoyuan Zhou

EWCE 1.1.2

Nathan Skene

ExiMiR 2.15.0

Sylvain Gubian

exomeCopy 1.19.0

Michael Love

exomePeak 2.7.0

Lin Zhang , Lian Liu , Jia Meng

ExperimentHub 0.101.13

Bioconductor Package Maintainer

ExperimentHubData 0.101.19

Bioconductor Package Maintainer

explorase 1.37.0

Michael Lawrence

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

ExpressionAtlas 1.1.3

Maria Keays

ExpressionView 1.25.0

Gabor Csardi

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fabia 2.19.0

Sepp Hochreiter

facopy 1.7.0

David Mosen-Ansorena

factDesign 1.49.0

Denise Scholtens

FamAgg 1.1.2

Johannes Rainer

farms 1.25.0

Djork-Arne Clevert

fastLiquidAssociation 1.9.0

Tina Gunderson

fastseg 1.19.0

Guenter Klambauer

fCI 1.3.2

Shaojun Tang

fdrame 1.45.0

Effi Kenigsberg

FEM 3.1.0

Zhen Yang

ffpe 1.17.0

Levi Waldron

FGNet 3.7.2

Sara Aibar

skipped

fgsea 0.99.7

Alexey Sergushichev

FindMyFriends 1.3.2

Thomas Lin Pedersen

FISHalyseR 1.7.2

Karesh Arunakirinathan , Andreas Heindl

flagme 1.29.0

Mark Robinson , Riccardo Romoli

flipflop 1.11.0

Elsa Bernard

flowAI 1.1.3

Gianni Monaco

flowBeads 1.11.0

Nikolas Pontikos

flowBin 1.9.0

Kieran O'Neill

flowcatchR 1.7.2

Federico Marini

flowCHIC 1.7.0

Author: Joachim Schumann

flowCL 1.11.2

Justin Meskas

flowClean 1.11.0

Kipper Fletez-Brant

skipped

flowClust 3.11.1

Greg Finak , Mike Jiang

flowCore 1.39.11

M.Jiang

flowCyBar 1.9.0

Joachim Schumann

flowDensity 1.7.2

Mehrnoush Malek

skipped

flowFit 1.11.0

Davide Rambaldi

flowFP 1.31.0

Herb Holyst

flowMap 1.11.2

Chiaowen Joyce Hsiao

flowMatch 1.9.0

Ariful Azad

flowMeans 1.33.0

Nima Aghaeepour

flowMerge 2.21.0

Greg Finak

flowPeaks 1.15.0

Yongchao Ge

flowPlots 1.21.0

N. Hawkins

flowQ 1.33.0

Mike Jiang

flowQB 2.1.2

Josef Spidlen

FlowRepositoryR 1.5.0

Josef Spidlen

FlowSOM 1.5.0

Sofie Van Gassen

flowStats 3.31.4

Greg Finak and Mike Jiang

flowTrans 1.25.0

Greg Finak

flowType 2.11.0

Nima Aghaeepour

flowUtils 1.37.0

Josef Spidlen

flowViz 1.37.4

Mike Jiang

flowVS 1.5.2

Ariful Azad

flowWorkspace 3.19.24

Greg Finak ,Mike Jiang

fmcsR 1.15.2

Thomas Girke

focalCall 1.7.0

Oscar Krijgsman

FourCSeq 1.7.2

Felix A. Klein

FRGEpistasis 1.9.0

Futao Zhang

frma 1.25.0

Matthew N. McCall

frmaTools 1.25.0

Matthew N. McCall

FunChIP 0.99.3

Alice Parodi

FunciSNP 1.15.0

Simon G. Coetzee

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gaga 2.19.0

David Rossell

gage 2.23.0

Weijun Luo

gaggle 1.41.0

Christopher Bare

gaia 2.17.0

S. Morganella

GAprediction 0.99.10

Jon Bohlin

garfield 1.1.2

Valentina Iotchkova

gaucho 1.9.2

Alex Murison , Christopher Wardell

gcatest 1.3.2

Wei Hao , John D. Storey

gCMAP 1.17.0

Thomas Sandmann

skipped

gCMAPWeb 1.13.0

Thomas Sandmann

gCrisprTools 0.99.92

Russell Bainer

gcrma 2.45.0

Z. Wu

gdsfmt 1.9.3

Xiuwen Zheng

geecc 1.7.7

Markus Boenn

GEM 0.99.3

Hong Pan

genArise 1.49.0

IFC Development Team

genbankr 1.1.5

Gabriel Becker

GENE.E 1.13.2

Joshua Gould

GeneAnswers 2.15.0

Lei Huang and Gang Feng

skipped

geneAttribution 0.99.2

Arthur Wuster

GeneBreak 1.3.0

Evert van den Broek

GeneExpressionSignature 1.19.0

Yang Cao , Fei Li ,Lu Han

genefilter 1.55.2

Bioconductor Package Maintainer

genefu 2.5.2

Benjamin Haibe-Kains , Markus Schroeder

GeneGA 1.23.0

Zhenpeng Li

GeneGeneInteR 0.99.1

Emily Mathieu

GeneMeta 1.45.0

Bioconductor Package Maintainer

GeneNetworkBuilder 1.15.3

Jianhong Ou

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

GeneOverlap 1.9.0

Li Shen, Mount Sinai

geneplast 0.99.94

Mauro Castro

geneplotter 1.51.0

Bioconductor Package Maintainer

geneRecommender 1.45.0

Greg Hather

GeneRegionScan 1.29.0

Lasse Folkersen

geneRxCluster 1.9.0

Charles Berry

GeneSelectMMD 2.17.0

Weiliang Qiu

GeneSelector 2.23.0

Martin Slawski

GENESIS 2.3.5

Matthew P. Conomos

geNetClassifier 1.13.0

Sara Aibar

GeneticsDesign 1.41.0

The R Genetics Project

GeneticsPed 1.35.0

David Henderson

genoCN 1.25.0

Wei Sun

GenoGAM 1.1.4

Georg Stricker

genomation 1.5.5

Altuna Akalin , Vedran Franke

GenomeGraphs 1.33.0

Steffen Durinck

GenomeInfoDb 1.9.12

Bioconductor Package Maintainer

genomeIntervals 1.29.0

Julien Gagneur

genomes 3.3.0

Chris Stubben

GenomicAlignments 1.9.6

Bioconductor Package Maintainer

GenomicFeatures 1.25.16

Bioconductor Package Maintainer

GenomicFiles 1.9.12

Bioconductor Package Maintainer

GenomicInteractions 1.7.2

Malcolm Perry , Liz Ing-Simmons

GenomicRanges 1.25.94

Bioconductor Package Maintainer

GenomicTuples 1.7.4

Peter Hickey

Genominator 1.27.0

James Bullard

genoset 1.29.9

Peter M. Haverty

genotypeeval 1.3.2

Jennifer Tom

genphen 1.0.1

Simo Kitanovski

GenRank 1.1.3

Chakravarthi Kanduri

GenVisR 1.1.5

Zachary Skidmore

GEOmetadb 1.33.2

Jack Zhu

GEOquery 2.39.3

Sean Davis

GEOsearch 1.3.2

Zhicheng Ji

GEOsubmission 1.25.0

Alexandre Kuhn

gespeR 1.5.2

Fabian Schmich

GEWIST 1.17.0

Wei Q. Deng

GGBase 3.35.0

VJ Carey

skipped

ggbio 1.21.5

Michael Lawrence

ggcyto 1.1.11

Mike Jiang

GGtools 5.9.0

VJ Carey

skipped

ggtree 1.5.14

Guangchuang Yu

girafe 1.25.0

J. Toedling

GLAD 2.37.0

Philippe Hupe

Glimma 1.1.9

Shian Su

GlobalAncova 3.41.0

Manuela Hummel

globalSeq 1.1.2

Armin Rauschenberger

globaltest 5.27.0

Jelle Goeman

gmapR 1.15.0

Michael Lawrence

GMRP 1.1.0

Yuan-De Tan

GOexpress 1.7.1

Kevin Rue-Albrecht

GOFunction 1.21.0

Jing Wang

GoogleGenomics 1.5.2

Siddhartha Bagaria

goProfiles 1.35.0

Alex Sanchez

GOSemSim 1.99.4

Guangchuang Yu

goseq 1.25.0

Nadia Davidson , Anthony Hawkins

skipped

GOSim 1.11.0

Holger Froehlich

GOstats 2.39.1

Bioconductor Package Maintainer

GOsummaries 2.7.0

Raivo Kolde

GOTHiC 1.9.1

Borbala Mifsud

goTools 1.47.0

Agnes Paquet

gpls 1.45.0

Bioconductor Package Maintainer

gprege 1.17.0

Alfredo Kalaitzis

skipped

gQTLBase 1.5.2

VJ Carey

gQTLstats 1.5.3

VJ Carey

graph 1.51.0

Bioconductor Package Maintainer

GraphAlignment 1.37.0

Joern P. Meier

GraphAT 1.45.0

Thomas LaFramboise

graphite 1.19.0

Gabriele Sales

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

GraphPAC 1.15.0

Gregory Ryslik

GRENITS 1.25.0

Edward Morrissey

GreyListChIP 1.5.0

Gordon Brown

GRmetrics 0.99.13

Nicholas Clark

groHMM 1.7.0

Anusha Nagari , Venkat Malladi , Tulip Nandu , W. Lee Kraus

GSALightning 1.1.6

Billy Heung Wing Chang

GSAR 1.7.3

Yasir Rahmatallah , Galina Glazko

GSCA 2.3.0

Zhicheng Ji

GSEABase 1.35.3

Bioconductor Package Maintainer

GSEAlm 1.33.0

Assaf Oron

GSReg 1.7.0

Bahman Afsari

GSRI 2.21.0

Julian Gehring

GSVA 1.21.0

Justin Guinney

gtrellis 1.5.2

Zuguang Gu

GUIDEseq 1.3.14

Lihua Julie Zhu

Guitar 1.11.9

Jia Meng

Gviz 1.17.7

Florian Hahne

gwascat 2.5.2

VJ Carey

GWASTools 1.19.3

Stephanie M. Gogarten , Adrienne Stilp

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h5vc 2.7.6

Paul Theodor Pyl

hapFabia 1.15.0

Sepp Hochreiter

Harman 1.1.2

Jason Ross

skipped

Harshlight 1.45.0

Maurizio Pellegrino

HCsnip 1.13.0

Askar Obulkasim

HDF5Array 1.1.13

Hervé Pagès

HDTD 1.7.1

Anestis Touloumis

Heatplus 2.19.0

Alexander Ploner

HELP 1.31.0

Reid F. Thompson

skipped

HEM 1.45.0

HyungJun Cho

hiAnnotator 1.7.3

Nirav V Malani

HIBAG 1.9.3

Xiuwen Zheng

hierGWAS 1.3.0

Laura Buzdugan

HilbertCurve 1.3.2

Zuguang Gu

HilbertVis 1.31.0

Simon Anders

HilbertVisGUI 1.31.0

Simon Anders

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

hiReadsProcessor 1.9.3

Nirav V Malani

HiTC 1.17.2

Nicolas Servant

skipped

HMMcopy 1.15.1

Daniel Lai , Sohrab Shah

hopach 2.33.0

Katherine S. Pollard

hpar 1.15.3

Laurent Gatto

HTqPCR 1.27.0

Heidi Dvinge

skipped

HTSanalyzeR 2.25.0

Xin Wang

HTSeqGenie 4.3.0

Jens Reeder

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

htSeqTools 1.19.0

Oscar Reina

skipped

HTSFilter 1.13.0

Andrea Rau

HybridMTest 1.17.0

Demba Fofana

hyperdraw 1.25.0

Paul Murrell

hypergraph 1.45.0

Bioconductor Package Maintainer

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iASeq 1.17.0

Yingying Wei

iBBiG 1.17.0

Aedin Culhane

ibh 1.21.0

Kircicegi Korkmaz

iBMQ 1.13.0

Greg Imholte

iCARE 1.1.0

Bill Wheeler

Icens 1.45.0

Bioconductor Package Maintainer

iCheck 1.3.0

Weiliang Qiu

iChip 1.27.0

Qianxing Mo

iClusterPlus 1.9.0

Qianxing Mo , Ronglai Shen

iCOBRA 1.1.2

Charlotte Soneson

IdeoViz 1.7.0

Shraddha Pai

idiogram 1.49.0

Karl J. Dykema

IdMappingAnalysis 1.17.0

Alex Lisovich , Roger Day

IdMappingRetrieval 1.21.0

Alex Lisovich , Roger Day

iGC 1.3.2

Liang-Bo Wang

IHW 1.1.3

Nikos Ignatiadis

illuminaio 0.15.1

Kasper Daniel Hansen

imageHTS 1.23.0

Joseph Barry

Imetagene 1.3.2

Audrey Lemacon

ImmuneSpaceR 1.1.3

Renan Sauteraud

immunoClust 1.5.1

Till Soerensen

IMPCdata 1.7.1

Jeremy Mason

ImpulseDE 0.99.0

Jil Sander , Nir Yosef

impute 1.47.0

Balasubramanian Narasimhan

InPAS 1.5.6

Jianhong Ou

INPower 1.9.0

Bill Wheeler

INSPEcT 1.3.2

Stefano de Pretis

intansv 1.11.0

Wen Yao

InteractionSet 1.1.6

Aaron Lun

interactiveDisplay 1.11.2

Shawn Balcome

interactiveDisplayBase 1.11.3

Shawn Balcome

inveRsion 1.21.0

Alejandro Caceres

IONiseR 1.3.4

Mike Smith

iontree 1.19.0

Mingshu Cao

iPAC 1.17.0

Gregory Ryslik

IPO 0.99.5

Riebenbauer, Thomas

IPPD 1.21.0

Martin Slawski

IRanges 2.7.15

Bioconductor Package Maintainer

iSeq 1.25.0

Qianxing Mo

isobar 1.19.0

Florian P Breitwieser

skipped

IsoGeneGUI 2.9.0

Setia Pramana

ISoLDE 1.1.2

Christelle Reynès

isomiRs 1.1.4

Lorena Pantano

ITALICS 2.33.0

Guillem Rigaill

iterativeBMA 1.31.0

Ka Yee Yeung

iterativeBMAsurv 1.31.0

Ka Yee Yeung

IVAS 1.5.1

Seonggyun Han

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joda 1.21.0

Ewa Szczurek

JunctionSeq 1.3.4

Stephen Hartley

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KCsmart 2.31.0

Jorma de Ronde

kebabs 1.7.3

Ulrich Bodenhofer

KEGGgraph 1.31.0

Jitao David Zhang

keggorthology 2.25.0

VJ Carey

KEGGprofile 1.15.0

Shilin Zhao

KEGGREST 1.13.2

Bioconductor Package Maintainer

kimod 1.1.0

M L Zingaretti

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lapmix 1.39.0

Yann Ruffieux

LBE 1.41.0

Cyril Dalmasso

ldblock 1.3.2

VJ Carey

LEA 1.5.0

Eric Frichot

LedPred 1.7.4

Aitor Gonzalez

les 1.23.0

Julian Gehring

lfa 1.3.2

Wei Hao , John D. Storey

limma 3.29.21

Gordon Smyth

limmaGUI 1.49.0

Yifang Hu , Gordon Smyth , Keith Satterley

LINC 1.00.2

Manuel Goepferich

Linnorm 1.1.14

Ken Shun Hang Yip

LiquidAssociation 1.27.0

Yen-Yi Ho

lmdme 1.15.0

Cristobal Fresno

LMGene 2.29.0

Blythe Durbin-Johnson

LOBSTAHS 0.99.8

James Collins

logicFS 1.43.0

Holger Schwender

logitT 1.31.0

Tobias Guennel

lol 1.21.0

Yinyin Yuan

LOLA 1.3.2

Nathan Sheffield

LowMACA 1.5.2

Stefano de Pretis , Giorgio Melloni

LPE 1.47.0

Nitin Jain

LPEadj 1.33.0

Carl Murie

lpNet 2.5.0

Lars Kaderali

lpsymphony 1.1.2

Vladislav Kim

lumi 2.25.0

Pan Du

skipped

LVSmiRNA 1.23.0

Stefano Calza

LymphoSeq 1.1.2

David Coffey

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M3D 1.7.11

Tom Mayo

maanova 1.43.0

Keith Sheppard

macat 1.47.0

Joern Toedling

maCorrPlot 1.43.0

Alexander Ploner

made4 1.47.0

Aedin Culhane

MADSEQ 0.99.9

Yu Kong

maftools 0.99.50

Anand Mayakonda

maigesPack 1.37.0

Gustavo H. Esteves

MAIT 1.7.0

Francesc Fernandez-Albert

makecdfenv 1.49.0

James W. MacDonald

MANOR 1.45.0

Pierre Neuvial

manta 1.19.0

Chris Berthiaume , Adrian Marchetti

MantelCorr 1.43.0

Brian Steinmeyer

mAPKL 1.5.2

Argiris Sakellariou

skipped

maPredictDSC 1.11.0

Adi Laurentiu Tarca

marray 1.51.0

Yee Hwa (Jean) Yang

maSigPro 1.45.1

Maria Jose Nueda

skipped

maskBAD 1.17.0

Michael Dannemann

MassArray 1.25.0

Reid F. Thompson

skipped

massiR 1.9.0

Sam Buckberry

MassSpecWavelet 1.39.0

Pan Du

matchBox 1.15.0

Luigi Marchionni , Anuj Gupta

MatrixRider 1.5.0

Elena Grassi

MBAmethyl 1.7.0

Tao Wang

MBASED 1.7.0

Oleg Mayba

MBCB 1.27.0

Jeff Allen

mBPCR 1.27.0

P.M.V. Rancoita

MBttest 1.1.0

Yuan-De Tan

mcaGUI 1.21.0

Wade K. Copeland

MCRestimate 2.29.0

Marc Johannes

mdgsa 1.5.2

David Montaner

mdqc 1.35.0

Gabriela Cohen-Freue

MEAL 1.3.7

Carlos Ruiz

skipped

MeasurementError.cor 1.45.0

Beiying Ding

MEDIPS 1.23.3

Lukas Chavez

MEDME 1.33.0

Mattia Pelizzola

MEIGOR 1.7.0

Jose Egea

MergeMaid 2.45.0

Xiaogang Zhong

Mergeomics 1.1.10

Zeyneb Kurt

MeSHDbi 1.9.0

Koki Tsuyuzaki

meshr 1.9.0

Koki Tsuyuzaki

MeSHSim 1.5.0

Jing ZHou

messina 1.9.2

Mark Pinese

metaArray 1.51.0

Hyungwon Choi

Metab 1.7.0

Raphael Aggio

metabomxtr 1.7.2

Michael Nodzenski

MetaboSignal 0.99.13

Andrea Rodriguez-Martinez , Rafael Ayala

metaCCA 1.1.2

Anna Cichonska

metagene 2.5.3

Charles Joly Beauparlant

metagenomeFeatures 1.3.2

Nathan D. Olson

metagenomeSeq 1.15.4

Joseph N. Paulson

metahdep 1.31.0

John R. Stevens

metaMS 1.9.0

Ron Wehrens

metaSeq 1.13.0

Koki Tsuyuzaki

metaseqR 1.13.2

Panagiotis Moulos

MetCirc 0.99.4

Thomas Naake

MethPed 1.1.2

Helena Carén

MethTargetedNGS 1.5.0

Muhammad Ahmer Jamil

methVisual 1.25.0

Arie Zackay

methyAnalysis 1.15.0

Pan Du

MethylAid 1.7.2

M. van Iterson

methylKit 0.99.2

Altuna Akalin

MethylMix 1.7.0

Olivier Gevaert

methylMnM 1.11.0

Yan Zhou

methylPipe 1.7.2

Kamal Kishore

MethylSeekR 1.13.0

Lukas Burger

methylumi 2.19.3

Sean Davis

Mfuzz 2.33.0

Matthias Futschik

MGFM 1.7.0

Khadija El Amrani

MGFR 0.99.4

Khadija El Amrani

mgsa 1.21.0

Sebastian Bauer

MiChip 1.27.0

Jonathon Blake

microRNA 1.31.0

"James F. Reid"

MIMOSA 1.11.2

Greg Finak

MineICA 1.13.0

Anne Biton

minet 3.31.0

Patrick E. Meyer

minfi 1.19.14

Kasper Daniel Hansen

MinimumDistance 1.17.0

Robert B Scharpf

MiPP 1.45.0

Sukwoo Kim

MiRaGE 1.15.0

Y-h. Taguchi

miRcomp 1.3.3

Matthew N. McCall

mirIntegrator 1.3.2

Diana Diaz

miRLAB 1.3.2

Thuc Duy Le

miRNAmeConverter 1.1.4

Stefan Haunsberger

miRNApath 1.33.0

James M. Ward

miRNAtap 1.7.0

Maciej Pajak

Mirsynergy 1.9.2

Yue Li

missMethyl 1.7.5

Belinda Phipson , Jovana Maksimovic

skipped

mitoODE 1.11.0

Gregoire Pau

MLInterfaces 1.53.1

V. Carey

MLP 1.21.1

Tobias Verbeke

MLSeq 1.13.2

Gokmen Zararsiz

MMDiff2 1.1.2

Gabriele Schweikert

skipped

mmnet 1.11.2

Yang Cao , Fei Li

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

MmPalateMiRNA 1.23.0

Guy Brock

MODA 0.99.6

Dong Li

mogsa 1.7.3

Chen Meng

monocle 1.7.2

Cole Trapnell

MoPS 1.7.0

Philipp Eser

mosaics 2.11.1

Dongjun Chung

motifbreakR 1.3.2

Simon Gert Coetzee

MotifDb 1.15.0

Paul Shannon

motifRG 1.17.0

Zizhen Yao

motifStack 1.17.2

Jianhong Ou

MotIV 1.29.0

Eloi Mercier , Raphael Gottardo

MPFE 1.9.0

Conrad Burden

mQTL.NMR 1.7.0

Lyamine Hedjazi

msa 1.5.5

Ulrich Bodenhofer

MSGFgui 1.7.2

Thomas Lin Pedersen

MSGFplus 1.7.2

Thomas Lin Pedersen

msmsEDA 1.11.0

Josep Gregori

msmsTests 1.11.0

Josep Gregori i Font

MSnbase 1.99.1

Laurent Gatto

MSnID 1.7.3

Vlad Petyuk

msPurity 0.99.6

Thomas N. Lawson

skipped

MSstats 3.5.0

Meena Choi

TIMEOUT

Mulcom 1.23.0

Claudio Isella

MultiAssayExperiment 0.101.49

Marcel Ramos

multiClust 1.3.0

Nathan Lawlor

MultiDataSet 1.1.2

Carlos Ruiz-Arenas

MultiMed 1.7.0

Simina M. Boca

multiscan 1.33.0

Mizanur Khondoker

multtest 2.29.0

Katherine S. Pollard

muscle 3.15.0

Alex T. Kalinka

MVCClass 1.47.0

Elizabeth Whalen

mvGST 1.7.0

John R. Stevens

mygene 1.9.1

Adam Mark, Chunlei Wu

skipped

myvariant 1.3.0

Adam Mark, Chunlei Wu

mzID 1.11.2

Thomas Lin Pedersen

mzR 2.7.4

Bernd Fischer , Steffen Neumann , Laurent Gatto , Qiang Kou

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NanoStringDiff 1.3.0

hong wang

NanoStringQCPro 1.5.0

Robert Ziman

NarrowPeaks 1.17.0

Pedro Madrigal

ncdfFlow 2.19.6

Mike Jiang

NCIgraph 1.21.0

Laurent Jacob

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

nem 2.47.0

Holger Froehlich

netbenchmark 1.5.2

Pau Bellot

netbiov 1.7.0

Shailesh tripathi

NetCRG 0.99.1

Isar Nassiri

nethet 1.5.2

Nicolas Staedler , Frank Dondelinger

NetPathMiner 1.9.1

Ahmed Mohamed

skipped

netprioR 0.99.2

Fabian Schmich

netresponse 1.33.2

Leo Lahti

NetSAM 1.13.0

Bing Zhang

networkBMA 1.15.0

Ka Yee Yeung

NGScopy 1.7.0

Xiaobei Zhao

nnNorm 2.37.0

Adi Laurentiu Tarca

NOISeq 2.17.1

Sonia Tarazona

nondetects 2.3.0

Valeriia Sherina

normalize450K 1.1.0

Jonathan Alexander Heiss

NormqPCR 1.19.0

James Perkins

skipped

normr 0.99.6

Johannes Helmuth

npGSEA 1.9.0

Jessica Larson

NTW 1.23.0

Yuanhua Liu

nucleoSim 1.1.2

Astrid Deschenes

nucleR 2.5.0

Ricard Illa

nudge 1.39.0

N. Dean

NuPoP 1.23.0

Ji-Ping Wang

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occugene 1.33.0

Oliver Will

OCplus 1.47.0

Alexander Ploner

odseq 1.1.2

José Jiménez

OGSA 1.3.0

Michael F. Ochs

oligo 1.37.2

Benilton Carvalho

oligoClasses 1.35.0

Benilton Carvalho and Robert Scharpf

OLIN 1.51.0

Matthias Futschik

OLINgui 1.47.0

Matthias Futschik

omicade4 1.13.0

Chen Meng

OmicCircos 1.11.0

Ying Hu

OmicsMarkeR 1.5.2

Charles E. Determan Jr.

OncoScore 1.1.0

Daniele Ramazzotti

OncoSimulR 2.3.16

Ramon Diaz-Uriarte

oneChannelGUI 1.39.0

Raffaele A Calogero

ontoCAT 1.25.0

Natalja Kurbatova

openCyto 1.11.8

Mike Jiang

OperaMate 1.5.0

Chenglin Liu

oposSOM 1.11.0

Henry Loeffler-Wirth

oppar 1.1.2

Soroor Hediyeh zadeh

OrderedList 1.45.0

Claudio Lottaz

OrganismDbi 1.15.1

Biocore Data Team

OSAT 1.21.0

Li Yan

Oscope 1.3.0

Ning Leng

OTUbase 1.23.0

Daniel Beck

OutlierD 1.37.0

Sukwoo Kim

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PAA 1.7.1

Michael Turewicz , Martin Eisenacher

PADOG 1.15.0

Adi Laurentiu Tarca

paircompviz 1.11.0

Michal Burda

pandaR 1.5.8

Joseph N. Paulson , Dan Schlauch

PAnnBuilder 1.37.0

Li Hong

skipped

panp 1.43.0

Peter Warren

PANR 1.19.0

Xin Wang

PanVizGenerator 1.1.3

Thomas Lin Pedersen

PAPi 1.13.0

Raphael Aggio

parglms 1.5.2

VJ Carey

parody 1.31.0

VJ Carey

skipped

Path2PPI 1.3.2

Oliver Philipp

pathifier 1.11.0

Assif Yitzhaky

PathNet 1.13.0

Jason B. Smith

pathRender 1.41.0

Vince Carey

pathVar 1.3.0

Samuel Zimmerman

pathview 1.13.0

Weijun Luo

paxtoolsr 1.7.3

Augustin Luna

Pbase 0.13.3

Sebastian Gibb , Laurent Gatto

pbcmc 1.1.0

Cristobal Fresno

pcaExplorer 1.1.2

Federico Marini

pcaGoPromoter 1.17.0

Morten Hansen

pcaMethods 1.65.0

Henning Redestig

PCAN 1.1.2

Matthew Page and Patrice Godard

pcot2 1.41.0

Sarah Song

PCpheno 1.35.0

Nolwenn Le Meur

pdInfoBuilder 1.37.1

Benilton Carvalho

pdmclass 1.45.0

James W. MacDonald

PECA 1.9.0

Tomi Suomi

pepStat 1.7.2

Gregory C Imholte

skipped

pepXMLTab 1.7.0

Xiaojing Wang

PGA 1.3.15

Bo Wen , Shaohang Xu

PGSEA 1.47.0

Karl Dykema

PharmacoGx 1.3.4

Benjamin Haibe-Kains

phenoDist 1.21.0

Xian Zhang

phenoTest 1.21.0

Evarist Planet

skipped

PhenStat 2.7.1

Jeremy Mason

philr 0.99.2

Justin Silverman

phyloseq 1.17.2

Paul J. McMurdie

piano 1.13.10

Leif Varemo

pickgene 1.45.0

Brian S. Yandell

PICS 2.17.0

Renan Sauteraud

Pigengene 0.99.23

Habil Zare

PING 2.17.1

Renan Sauteraud

pint 1.23.0

Olli-Pekka Huovilainen

pkgDepTools 1.39.0

Seth Falcon

plateCore 1.31.0

Errol Strain

skipped

plethy 1.11.0

Daniel Bottomly

plgem 1.45.0

Norman Pavelka

plier 1.43.0

Crispin Miller

PLPE 1.33.0

Soo-heang Eo

skipped

plrs 1.13.0

Gwenael G.R. Leday to

plw 1.33.0

Magnus Astrand

pmm 1.5.0

Anna Drewek

podkat 1.5.3

Ulrich Bodenhofer

polyester 1.9.7

Jack Fu , Jeff Leek

Polyfit 1.7.0

Conrad Burden

ppiStats 1.39.0

Bioconductor Package Maintainer

skipped

pqsfinder 1.1.2

Jiri Hon

prada 1.49.0

Florian Hahne

skipped

prebs 1.13.0

Karolis Uziela

PREDA 1.19.0

Francesco Ferrari

predictionet 1.19.0

Benjamin Haibe-Kains , Catharina Olsen

preprocessCore 1.35.0

Benjamin Milo Bolstad

Prize 1.3.0

Daryanaz Dargahi

proBAMr 1.7.0

Xiaojing Wang

PROcess 1.49.0

Xiaochun Li

procoil 2.1.3

Ulrich Bodenhofer

ProCoNA 1.11.0

David L Gibbs

profileScoreDist 1.1.2

Paal O. Westermark

pRoloc 1.13.15

Laurent Gatto

pRolocGUI 1.7.4

Laurent Gatto , Lisa M Breckels

PROMISE 1.25.0

Stan Pounds , Xueyuan Cao

PROPER 1.5.2

Hao Wu

Prostar 1.5.7

Samuel Wieczorek

prot2D 1.11.0

Sebastien Artigaud

proteinProfiles 1.13.1

Julian Gehring

ProteomicsAnnotationHubData 1.3.3

Laurent Gatto

proteoQC 1.9.4

Bo Wen

ProtGenerics 1.5.1

Laurent Gatto

PSEA 1.7.0

Alexandre Kuhn

PSICQUIC 1.11.0

Paul Shannon

psygenet2r 1.5.0

Alba Gutierrez-Sacristan

puma 3.14.1

Xuejun Liu

PureCN 1.1.50

Markus Riester

pvac 1.21.0

Jun Lu , Pierre R. Bushel

pvca 1.13.0

Jianying LI

Pviz 1.7.2

Renan Sauteraud

PWMEnrich 4.9.2

Robert Stojnic

pwOmics 1.5.1

Astrid Wachter

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qcmetrics 1.11.2

Laurent Gatto

QDNAseq 1.9.1

Daoud Sie

qpcrNorm 1.31.0

Jessica Mar

qpgraph 2.7.1

Robert Castelo

qrqc 1.27.0

Vince Buffalo

qsea 0.99.4

Matthias Lienhard

QUALIFIER 1.17.2

Mike Jiang

quantro 1.7.2

Stephanie Hicks

quantsmooth 1.39.0

Jan Oosting

QuartPAC 1.5.0

Gregory Ryslik

QuasR 1.13.2

Michael Stadler

QuaternaryProd 1.0.3

Carl Tony Fakhry

QUBIC 1.1.3

Yu Zhang

qusage 2.5.0

Christopher Bolen

qvalue 2.5.2

John D. Storey , Andrew J. Bass

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R3CPET 1.5.3

Mohamed Nadhir Djekidel

r3Cseq 1.19.0

Supat Thongjuea

R453Plus1Toolbox 1.23.0

Hans-Ulrich Klein

R4RNA 1.1.0

Daniel Lai

rain 1.7.0

Paul F. Thaben

rama 1.47.0

Raphael Gottardo

RamiGO 1.19.0

Markus Schroeder

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

randPack 1.19.0

Robert Gentleman

skipped

RankProd 2.99.3

Francesco Del Carratore

RareVariantVis 1.7.2

Tomasz Stokowy

Rariant 1.9.3

Julian Gehring

RbcBook1 1.41.0

Vince Carey

RBGL 1.49.3

Bioconductor Package Maintainer

RBioinf 1.33.0

Robert Gentleman

rBiopaxParser 2.12.0

Frank Kramer

RBM 1.5.0

Dongmei Li

Rbowtie 1.13.0

Michael Stadler

rbsurv 2.31.0

Soo-heang Eo

skipped

Rcade 1.15.1

Jonathan Cairns

RCAS 0.99.4

Bora Uyar

RCASPAR 1.19.0

Douaa Mugahid , Lars Kaderali

rcellminer 1.5.2

Augustin Luna , Vinodh Rajapakse

skipped

rCGH 1.3.3

Frederic Commo

Rchemcpp 2.11.0

Guenter Klambauer

RchyOptimyx 2.13.0

Adrin Jalali , Nima Aghaeepour

Rcpi 1.9.0

Nan Xiao

skipped

RCy3 1.3.0

Tanja Muetze , Georgi Kolishovski , Paul Shannon

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

RCyjs 1.5.7

Paul Shannon

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

RCytoscape 1.23.0

Paul Shannon

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

RDAVIDWebService 1.11.0

Cristobal Fresno

rDGIdb 0.99.5

Thomas Thurnherr

Rdisop 1.33.0

Steffen Neumann

RDRToolbox 1.23.0

Christoph Bartenhagen

ReactomePA 1.17.4

Guangchuang Yu

ReadqPCR 1.19.0

James Perkins

reb 1.51.0

Karl J. Dykema

recount 0.99.34

Leonardo Collado-Torres

recoup 1.1.2

Panagiotis Moulos

RedeR 1.21.0

Mauro Castro

REDseq 1.19.0

Lihua Julie Zhu

RefNet 1.9.0

Paul Shannon

RefPlus 1.43.0

Kai-Ming Chang

regioneR 1.5.2

Bernat Gel

regionReport 1.7.8

Leonardo Collado-Torres

Repitools 1.19.2

Mark Robinson

ReportingTools 2.13.2

Jason A. Hackney , Gabriel Becker , Jessica L. Larson

ReQON 1.19.0

Christopher Cabanski

rfPred 1.11.0

Hugo Varet

rGADEM 2.21.0

Arnaud Droit

RGalaxy 1.17.3

Bioconductor Package Maintainer

RGraph2js 1.0.1

Stephane Cano

Rgraphviz 2.17.0

Kasper Daniel Hansen

rGREAT 1.5.2

Zuguang Gu

RGSEA 1.7.2

Chengcheng Ma

TIMEOUT

skipped

rgsepd 1.5.2

Karl Stamm

rhdf5 2.17.6

Bernd Fischer

Rhtslib 1.5.4

Bioconductor Package Maintainer

rHVDM 1.39.0

Martino Barenco

RiboProfiling 1.3.2

A. Popa

TIMEOUT

skipped

riboSeqR 1.7.3

Thomas J. Hardcastle

skipped

RImmPort 1.1.2

Ravi Shankar

Ringo 1.37.0

J. Toedling

RIPSeeker 1.13.0

Yue Li

Risa 1.15.0

Alejandra Gonzalez-Beltran

RLMM 1.35.0

Nusrat Rabbee

Rmagpie 1.29.0

Camille Maumet

RMassBank 2.1.0

RMassBank at Eawag

skipped

rMAT 3.23.0

Arnaud Droit and Raphael Gottardo

RmiR 1.29.0

Francesco Favero

RNAinteract 1.21.0

Bernd Fischer

RNAither 2.21.0

Lars Kaderali

RNAprobR 1.5.0

Nikos Sidiropoulos

rnaseqcomp 1.3.5

Mingxiang Teng

rnaSeqMap 2.31.0

Michal Okoniewski

skipped

RNASeqPower 1.13.0

Terry M Therneau

RnaSeqSampleSize 1.5.2

Shilin Zhao

RnBeads 1.5.1

Fabian Mueller

skipped

Rnits 1.7.2

Dipen P. Sangurdekar

roar 1.9.1

Elena Grassi

ROC 1.49.0

Vince Carey

Roleswitch 1.11.0

Yue Li

rols 2.1.3

Laurent Gatto

ROntoTools 2.1.0

Calin Voichita

ropls 1.5.18

Etienne A. Thevenot

ROTS 1.1.4

Fatemeh Seyednasrollah

RPA 1.29.0

Leo Lahti

RpsiXML 2.15.0

Jitao David Zhang

rpx 1.9.3

Laurent Gatto

Rqc 1.7.2

Welliton Souza

rqubic 1.19.0

Jitao David Zhang

rRDP 1.7.0

Michael Hahsler

RRHO 1.13.0

Jonathan Rosenblatt

Rsamtools 1.25.2

Bioconductor Package Maintainer

rsbml 2.31.0

Michael Lawrence

rSFFreader 0.21.0

Matt Settles

Rsubread 1.23.4

Wei Shi

RSVSim 1.13.0

Christoph Bartenhagen

rTANDEM 1.13.0

Frederic Fournier

RTCA 1.25.0

Jitao David Zhang

skipped

RTCGA 1.3.3

Marcin Kosinski

RTCGAToolbox 2.3.2

Mehmet Kemal Samur

RTN 1.11.0

Mauro Castro

RTopper 1.19.0

Luigi Marchionni

rtracklayer 1.33.12

Michael Lawrence

Rtreemix 1.35.0

Jasmina Bogojeska

rTRM 1.11.2

Diego Diez

rTRMui 1.11.0

Diego Diez

RUVcorr 1.5.2

Saskia Freytag

RUVnormalize 1.7.0

Laurent Jacob

RUVSeq 1.7.2

Davide Risso

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S4Vectors 0.11.15

Bioconductor Package Maintainer

safe 3.13.0

William T. Barry

sagenhaft 1.43.0

Tim Beissbarth

SAGx 1.47.0

Per Broberg,

SamSPECTRAL 1.27.2

Habil Zare

sangerseqR 1.9.2

Jonathon Hill

SANTA 2.11.2

Alex J. Cornish

sapFinder 1.11.0

Shaohang Xu , Bo Wen

saps 2.5.2

Daniel Schmolze

skipped

savR 1.11.0

R. Brent Calder

SBMLR 1.69.0

Tomas Radivoyevitch

SC3 1.1.7

Vladimir Kiselev

SCAN.UPC 2.15.0

Stephen R. Piccolo

scater 1.1.14

Davis McCarthy

scde 2.1.2

Jean Fan

ScISI 1.45.0

Tony Chiang

scran 1.1.9

Aaron Lun

scsR 1.9.0

Andrea Franceschini , Roger Meier , Christian von Mering

segmentSeq 2.7.0

Thomas J. Hardcastle

SELEX 1.5.0

Harmen Bussemaker

SemDist 1.7.0

Ian Gonzalez

SEPA 1.3.2

Zhicheng Ji

seq2pathway 1.5.0

Xinan Yang with contribution from Lorenzo Pesce and Ana Marija Sokovic

SeqArray 1.13.4

Xiuwen Zheng

seqbias 1.21.0

Daniel Jones

seqCNA 1.19.0

David Mosen-Ansorena

SeqGSEA 1.13.0

Xi Wang

seqLogo 1.39.0

Oliver Bembom

seqPattern 1.5.0

Vanja Haberle

seqplots 1.11.2

Przemyslaw Stempor

seqTools 1.7.0

Wolfgang Kaisers

SeqVarTools 1.11.4

Stephanie M. Gogarten , Xiuwen Zheng , Adrienne Stilp

sevenbridges 1.3.8

Tengfei Yin

SGSeq 1.7.12

Leonard Goldstein

shinyMethyl 1.8.0

Jean-Philippe Fortin

skipped

shinyTANDEM 1.11.0

Frederic Fournier

ShortRead 1.31.1

Bioconductor Package Maintainer

SICtools 1.3.2

Xiaobin Xing

sigaR 1.20.0

Wessel N. van Wieringen

skipped

SigCheck 2.5.0

Rory Stark

SigFuge 1.11.0

Patrick Kimes

siggenes 1.47.0

Holger Schwender

sights 0.99.4

Elika Garg

signeR 0.99.14

Renan Valieris

sigPathway 1.41.0

Weil Lai

sigsquared 1.5.0

UnJin Lee

SIM 1.43.0

Renee X. de Menezes

SIMAT 1.5.0

Mo R. Nezami Ranjbar

SimBindProfiles 1.11.0

Bettina Fischer

similaRpeak 1.5.3

Astrid Louise Deschenes

simpleaffy 2.49.0

Crispin Miller

simulatorZ 1.7.0

Yuqing Zhang

sincell 1.5.3

Miguel Julia , Antonio Rausell

SISPA 1.3.2

Bhakti Dwivedi

skipped

sizepower 1.43.0

Weiliang Qiu

skewr 1.5.2

Ryan Putney

SLGI 1.33.0

Nolwenn Le Meur

SLqPCR 1.39.0

Matthias Kohl

SMAP 1.37.0

Robin Andersson

SMITE 1.1.3

Neil Ari Wijetunga , Andrew Damon Johnston

SNAGEE 1.13.0

David Venet

snapCGH 1.43.0

John Marioni

snm 1.21.0

John D. Storey

SNPchip 2.19.0

Robert Scharpf

SNPediaR 0.99.3

David Montaner

SNPhood 1.3.3

Christian Arnold

SNPRelate 1.7.3

Xiuwen Zheng

snpStats 1.23.0

David Clayton

soGGi 1.5.3

Tom Carroll

SomaticSignatures 2.9.4

Julian Gehring

SpacePAC 1.11.0

Gregory Ryslik

specL 1.7.6

Christian Panse , Witold E. Wolski

SpeCond 1.27.0

Florence Cavalli

SPEM 1.13.0

Xinyi YANG

SPIA 2.25.0

Adi Laurentiu Tarca

SpidermiR 1.2.2

Claudia Cava

spikeLI 2.33.0

Enrico Carlon

spkTools 1.29.0

Matthew N McCall

splicegear 1.45.0

Laurent Gautier

spliceR 1.15.0

Johannes Waage , Kristoffer Vitting-Seerup

spliceSites 1.21.0

Wolfgang Kaisers

SplicingGraphs 1.13.1

H. Pagès

splineTimeR 1.1.2

Herbert Braselmann , Agata Michna

skipped

splots 1.39.0

Wolfgang Huber

spotSegmentation 1.47.0

Chris Fraley

SQUADD 1.23.0

Martial Sankar

SRAdb 1.31.0

Jack Zhu

sRAP 1.13.0

Charles Warden

sscore 1.45.0

Richard Kennedy

sscu 1.1.2

Yu Sun

sSeq 1.11.0

Danni Yu

ssize 1.47.0

Gregory R. Warnes

SSPA 2.13.0

Maarten van Iterson

ssviz 1.7.2

Diana Low

STAN 2.1.3

Benedikt Zacher

staRank 1.15.0

Juliane Siebourg

Starr 1.29.0

Benedikt Zacher

STATegRa 1.7.3

David Gomez-Cabrero , Patricia Sebastián-León , Gordon Ball

stepNorm 1.45.0

Yuanyuan Xiao

stepwiseCM 1.19.0

Askar Obulkasim

Streamer 1.19.0

Martin Morgan

STRINGdb 1.13.0

Alexander Roth

subSeq 1.3.2

Andrew J. Bass , John D. Storey

SummarizedExperiment 1.3.82

Bioconductor Package Maintainer

supraHex 1.11.1

Hai Fang

survcomp 1.23.0

Benjamin Haibe-Kains , Markus Schroeder , Catharina Olsen

Sushi 1.11.0

Douglas H Phanstiel

sva 3.21.0

Jeffrey T. Leek , John D. Storey , W. Evan Johnson

SVAPLSseq 0.99.107

Sutirtha Chakraborty

SVM2CRM 1.5.0

Guidantonio Malagoli Tagliazucchi

SWATH2stats 1.3.10

Peter Blattmann

SwathXtend 1.1.0

Jemma Wu

SwimR 1.11.0

Randy Blakely

switchBox 1.7.1

Bahman Afsari , Luigi Marchionni

switchde 0.99.10

Kieran Campbell

synapter 1.15.2

Laurent Gatto and Sebastian Gibb

synlet 1.3.2

Chunxuan Shao

systemPipeR 1.7.3

Thomas Girke

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TargetScore 1.11.0

Yue Li

TargetSearch 1.29.1

Alvaro Cuadros-Inostroza

TarSeqQC 1.3.13

Gabriela Merino

TCC 1.13.1

Jianqiang Sun , Tomoaki Nishiyama

TCGAbiolinks 2.1.7

Antonio Colaprico , Tiago Chedraoui Silva

TDARACNE 1.23.0

Zoppoli Pietro

TEQC 3.13.0

Manuela Hummel

skipped

ternarynet 1.17.0

Matthew N. McCall

TFBSTools 1.11.6

Ge Tan

tigre 1.27.0

Antti Honkela

tilingArray 1.51.0

Zhenyu Xu

timecourse 1.45.0

Yu Chuan Tai

TIN 1.5.2

Bjarne Johannessen

TitanCNA 1.11.0

Gavin Ha , Sohrab P Shah

tkWidgets 1.51.0

J. Zhang

tofsims 1.1.2

Lorenz Gerber

ToPASeq 1.7.0

Ivana Ihnatova

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

topGO 2.25.0

Adrian Alexa

TPP 2.3.4

Dorothee Childs

tracktables 1.7.2

Tom Carroll

trackViewer 1.9.14

Jianhong Ou

transcriptR 1.1.2

Armen R. Karapetyan

tRanslatome 1.11.0

Toma Tebaldi , Erik Dassi

skipped

TransView 1.17.0

Julius Muller

traseR 1.3.0

li chen

triform 1.15.0

Thomas Carroll

trigger 1.19.0

John D. Storey

trio 3.11.0

Holger Schwender

triplex 1.13.0

Jiri Hon

TRONCO 2.5.2

BIMIB Group

TSCAN 1.11.2

Zhicheng Ji

tspair 1.31.0

Jeffrey T. Leek

TSSi 1.19.0

Julian Gehring

TurboNorm 1.21.0

Maarten van Iterson

tweeDEseq 1.19.0

Juan R Gonzalez

twilight 1.49.0

Stefanie Scheid

tximport 1.1.4

Michael Love

TypeInfo 1.39.0

Duncan Temple Lang

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UNDO 1.15.0

Niya Wang

unifiedWMWqPCR 1.9.0

Joris Meys

UniProt.ws 2.13.0

Bioconductor Package Maintainer

Uniquorn 1.0.8

'Raik Otto'

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VanillaICE 1.35.0

Robert Scharpf

variancePartition 1.3.10

Gabriel E. Hoffman

VariantAnnotation 1.19.10

Valerie Obenchain

VariantFiltering 1.9.13

Robert Castelo

VariantTools 1.15.1

Michael Lawrence

...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

vbmp 1.41.0

Nicola Lama

Vega 1.21.0

Sandro Morganella

VegaMC 3.11.0

Sandro Morganella

viper 1.7.3

Mariano J Alvarez

vsn 3.41.0

Wolfgang Huber

skipped

vtpnet 0.13.0

VJ Carey

skipped

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wateRmelon 1.17.1

Leo

wavClusteR 2.7.2

Federico Comoglio

waveTiling 1.15.0

Kristof De Beuf

weaver 1.39.0

Seth Falcon

webbioc 1.45.0

Colin A. Smith

widgetTools 1.51.0

Jianhua Zhang

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XBSeq 1.2.4

Yuanhang Liu

xcms 1.49.6

Steffen Neumann

XDE 2.19.0

Robert Scharpf

xmapbridge 1.31.0

Chris Wirth

skipped

xps 1.33.0

Christian Stratowa

XVector 0.13.7

Hervé Pagès

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YAPSA 0.99.10

Daniel Huebschmann